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STRINGSTRING

Access through Cytoscape


The protein-protein interactions in this database can also be accessed through Cytoscape, a platform for biologcial network analysis. This requires version 3.6 of Cytoscape or greater and version 1.4 of the STRING app or greater, which is installable for free via the Cytoscape app store. A tutorial that explains how to use Cytoscape with the STRING app is available here.



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Some of the files below can be made smaller (prior to download),
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Interaction Data

File
Description
Access
protein network data (scored links between proteins)
Creative Commons License
protein network data (incl. subscores per channel)
Creative Commons License
protein network data (incl. distinction: direct vs. interologs); all users require a license
Creative Commons License

Accessory Data

Download host specific data.

File
Description
Access
sequences of the proteins in STRING (can be used as a blast db)
Creative Commons License
species.v10.5.txt (19.9 Kb)
organisms in STRING
Creative Commons License
aliases for STRING proteins: locus names, accessions, descriptions...
Creative Commons License

Full Database Dumps

File
Description
Access
STRING database schema
Creative Commons License
full database, part I: the players (proteins, species, COGs,...)
Creative Commons License
full database, part II: the networks (nodes, edges, scores,...)
Creative Commons License
full database, part III: interaction evidence (datasets, abstracts, predictions, ...)
Creative Commons License