## taxon_id STRING_type STRING_name_compact official_name_NCBI 3702 core Arabidopsis thaliana Arabidopsis thaliana 3711 core Brassica rapa Brassica rapa 3847 core Glycine max Glycine max 4081 core Solanum lycopersicum Solanum lycopersicum 4113 core Solanum tuberosum Solanum tuberosum 4513 core Hordeum vulgare Hordeum vulgare 4538 periphery Oryza glaberrima Oryza glaberrima 4555 core Setaria italica Setaria italica 4558 periphery Sorghum bicolor Sorghum bicolor 4577 core Zea mays Zea mays 4896 core Schizosaccharomyces pombe Schizosaccharomyces pombe 4932 core Saccharomyces cerevisiae Saccharomyces cerevisiae 5664 periphery Leishmania major Leishmania major 5722 core Trichomonas vaginalis Trichomonas vaginalis 6239 core Caenorhabditis elegans Caenorhabditis elegans 7159 periphery Aedes aegypti Aedes aegypti 7227 core Drosophila melanogaster Drosophila melanogaster 7244 periphery Drosophila virilis Drosophila virilis 7460 core Apis mellifera Apis mellifera 7955 periphery Danio rerio Danio rerio 8049 core Gadus morhua Gadus morhua 8364 core Xenopus Silurana Xenopus (Silurana) tropicalis 9031 core Gallus gallus Gallus gallus 9103 periphery Meleagris gallopavo Meleagris gallopavo 9361 periphery Dasypus novemcinctus Dasypus novemcinctus 9483 core Callithrix jacchus Callithrix jacchus 9544 periphery Macaca mulatta Macaca mulatta 9598 periphery Pan troglodytes Pan troglodytes 9601 periphery Pongo abelii Pongo abelii 9606 core Homo sapiens Homo sapiens 9615 core Canis lupus Canis lupus familiaris 9669 core Mustela putorius Mustela putorius furo 9685 periphery Felis catus Felis catus 9785 core Loxodonta africana Loxodonta africana 9796 periphery Equus caballus Equus caballus 9823 periphery Sus scrofa Sus scrofa 9913 periphery Bos taurus Bos taurus 9986 periphery Oryctolagus cuniculus Oryctolagus cuniculus 10090 core Mus musculus Mus musculus 10116 periphery Rattus norvegicus Rattus norvegicus 10141 periphery Cavia porcellus Cavia porcellus 10245 core Vaccinia virus (strain Western Reserve) Vaccinia virus (strain Western Reserve) 10255 core Variola virus (isolate Human/India/Ind3/1967) Variola virus (isolate Human/India/Ind3/1967) 10258 core Orf virus (strain Goat/Texas/SA00/2000) Orf virus (strain Goat/Texas/SA00/2000) 10261 core Fowlpox virus (strain NVSL) Fowlpox virus (strain NVSL) 10271 core Rabbit fibroma virus (strain Kasza) Rabbit fibroma virus (strain Kasza) 10273 core Myxoma virus (strain Lausanne) Myxoma virus (strain Lausanne) 10276 core Swinepox virus (strain Swine/Nebraska/17077-99/1999) Swinepox virus (strain Swine/Nebraska/17077-99/1999) 10279 core Molluscum contagiosum virus subtype 1 Molluscum contagiosum virus subtype 1 10298 core Human herpesvirus 1 (strain 17) Human herpesvirus 1 (strain 17) 10310 core Human herpesvirus 2 (strain HG52) Human herpesvirus 2 (strain HG52) 10335 core Varicella-zoster virus (strain Dumas) Varicella-zoster virus (strain Dumas) 10359 core Human cytomegalovirus (strain Merlin) Human cytomegalovirus (strain Merlin) 10366 core Murid herpesvirus 1 (strain Smith) Murid herpesvirus 1 (strain Smith) 10376 core Epstein-Barr virus (strain B95-8) Epstein-Barr virus (strain B95-8) 10381 core Saimiriine herpesvirus 2 (strain 11) Saimiriine herpesvirus 2 (strain 11) 10390 core Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) 10407 core Hepatitis B virus genotype C subtype ayr (isolate Human/Japan/Okamoto/-) Hepatitis B virus genotype C subtype ayr (isolate Human/Japan/Okamoto/-) 10493 core Frog virus 3 (isolate Goorha) Frog virus 3 (isolate Goorha) 10497 core African swine fever virus (strain Badajoz 1971 Vero-adapted) African swine fever virus (strain Badajoz 1971 Vero-adapted) 10506 core Paramecium bursaria Chlorella virus 1 Paramecium bursaria Chlorella virus 1 10623 core Cottontail rabbit papillomavirus (strain Kansas) Cottontail rabbit papillomavirus (strain Kansas) 10633 core Simian virus 40 Simian virus 40 10658 core Enterobacteria phage PRD1 Enterobacteria phage PRD1 10661 core Pseudoalteromonas phage PM2 Pseudoalteromonas phage PM2 10677 core Enterobacteria phage Mu Enterobacteria phage Mu 10678 core Enterobacteria phage P1 Enterobacteria phage P1 10679 core Enterobacteria phage P2 Enterobacteria phage P2 10710 core Enterobacteria phage lambda Enterobacteria phage lambda 10719 core Streptomyces phage phiC31 Streptomyces phage phiC31 10754 core Enterobacteria phage P22 Enterobacteria phage P22 10756 core Bacillus phage phi29 Bacillus phage phi29 10760 core Enterobacteria phage T7 Enterobacteria phage T7 10870 core Enterobacteria phage M13 Enterobacteria phage M13 10879 core Pseudomonas phage phi6 Pseudomonas phage phi6 11033 core Semliki forest virus Semliki forest virus 11034 core Sindbis virus Sindbis virus 11047 core Equine arteritis virus (strain Bucyrus) Equine arteritis virus (strain Bucyrus) 11053 core Dengue virus type 1 (strain Nauru/West Pac/1974) Dengue virus type 1 (strain Nauru/West Pac/1974) 11060 core Dengue virus type 2 (strain Jamaica/1409/1983) Dengue virus type 2 (strain Jamaica/1409/1983) 11069 core Dengue virus type 3 (strain Philippines/H87/1956) Dengue virus type 3 (strain Philippines/H87/1956) 11070 core Dengue virus type 4 (strain Dominica/814669/1981) Dengue virus type 4 (strain Dominica/814669/1981) 11072 core Japanese encephalitis virus (strain SA(v)) Japanese encephalitis virus (strain SA(v)) 11082 core West Nile virus West Nile virus 11089 core Yellow fever virus (strain 17D vaccine) Yellow fever virus (strain 17D vaccine) 11099 core Bovine viral diarrhea virus (isolate NADL) Bovine viral diarrhea virus (isolate NADL) 11103 core Hepatitis C virus genotype 1a (isolate H) Hepatitis C virus genotype 1a (isolate H) 11137 core Human coronavirus 229E Human coronavirus 229E 11161 core Mumps virus (strain Miyahara vaccine) Mumps virus (strain Miyahara vaccine) 11176 core Newcastle disease virus (strain Chicken/United States/B1/48) Newcastle disease virus (strain Chicken/United States/B1/48) 11191 core Sendai virus (strain Ohita) Sendai virus (strain Ohita) 11234 core Measles virus (strain Ichinose-B95a) Measles virus (strain Ichinose-B95a) 11250 core Human respiratory syncytial virus B (strain B1) Human respiratory syncytial virus B (strain B1) 11269 core Marburg virus (strain Kenya/Musoke/1980) Marburg virus (strain Kenya/Musoke/1980) 11277 core Vesicular stomatitis Indiana virus (strain San Juan) Vesicular stomatitis Indiana virus (strain San Juan) 11290 core Infectious hematopoietic necrosis virus (strain WRAC) Infectious hematopoietic necrosis virus (strain WRAC) 11292 core Rabies virus (strain Pasteur vaccins / PV) Rabies virus (strain Pasteur vaccins / PV) 11303 core Bovine ephemeral fever virus (strain BB7721) Bovine ephemeral fever virus (strain BB7721) 11320 core Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) 11520 core Influenza B virus (strain B/Lee/1940) Influenza B virus (strain B/Lee/1940) 11588 core Rift valley fever virus (strain ZH-548 M12) Rift valley fever virus (strain ZH-548 M12) 11599 core Hantaan virus (strain 76-118) Hantaan virus (strain 76-118) 11613 core Tomato spotted wilt virus (strain Brazilian Br-01) Tomato spotted wilt virus (strain Brazilian Br-01) 11620 core Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) 11623 core Lymphocytic choriomeningitis virus (strain Armstrong) Lymphocytic choriomeningitis virus (strain Armstrong) 11642 core Simian foamy virus (isolate chimpanzee) Simian foamy virus (isolate chimpanzee) 11676 core Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) 11709 core Human immunodeficiency virus type 2 subtype A (isolate BEN) Human immunodeficiency virus type 2 subtype A (isolate BEN) 11723 core Simian immunodeficiency virus (isolate Mm142-83) Simian immunodeficiency virus (isolate Mm142-83) 11786 core Moloney murine leukemia virus (isolate Shinnick) Moloney murine leukemia virus (isolate Shinnick) 11886 core Avian leukosis virus RSA Avian leukosis virus RSA 11976 core Rabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) Rabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) 11978 core Feline calicivirus (strain Cat/United States/Urbana/1960) Feline calicivirus (strain Cat/United States/Urbana/1960) 11983 core Norwalk virus (strain GI/Human/United States/Norwalk/1968) Norwalk virus (strain GI/Human/United States/Norwalk/1968) 12092 core Human hepatitis A virus genotype IB (isolate HM175) Human hepatitis A virus genotype IB (isolate HM175) 12104 core Encephalomyocarditis virus (strain Rueckert) Encephalomyocarditis virus (strain Rueckert) 12110 core Foot-and-mouth disease virus (isolate Swine/Taiwan/OTai/1997 serotype O) Foot-and-mouth disease virus (isolate Swine/Taiwan/OTai/1997 serotype O) 12161 core Beet yellows virus (isolate Ukraine) Beet yellows virus (isolate Ukraine) 12183 core Potato virus X (strain X3) Potato virus X (strain X3) 12216 core Potato virus Y (strain N) Potato virus Y (strain N) 12242 core Tobacco mosaic virus (strain vulgare) Tobacco mosaic virus (strain vulgare) 12264 core Cowpea mosaic virus (strain SB) Cowpea mosaic virus (strain SB) 12280 core Tomato ringspot virus (isolate raspberry) Tomato ringspot virus (isolate raspberry) 12302 core Brome mosaic virus Brome mosaic virus 12305 core Cucumber mosaic virus (strain FNY) Cucumber mosaic virus (strain FNY) 12317 core Tobacco streak virus (strain WC) Tobacco streak virus (strain WC) 12321 core Alfalfa mosaic virus (strain 425 / isolate Leiden) Alfalfa mosaic virus (strain 425 / isolate Leiden) 12327 core Barley stripe mosaic virus Barley stripe mosaic virus 12355 core Enterobacteria phage T1 Enterobacteria phage T1 12455 core Borna disease virus (strain V) Borna disease virus (strain V) 12461 core Hepatitis E virus genotype 1 (isolate Human/China/HeBei/1987) Hepatitis E virus genotype 1 (isolate Human/China/HeBei/1987) 12475 core Hepatitis delta virus genotype I (isolate D380) Hepatitis delta virus genotype I (isolate D380) 12538 core Mokola virus (MOKV) Mokola virus (MOKV) 12657 core Equine herpesvirus 2 (strain 86/87) Equine herpesvirus 2 (strain 86/87) 12777 core Parsnip yellow fleck virus (isolate P-121) Parsnip yellow fleck virus (isolate P-121) 13735 core Pelodiscus sinensis Pelodiscus sinensis 28289 core Cydia pomonella granulosis virus (isolate Mexico/1963) Cydia pomonella granulosis virus (isolate Mexico/1963) 28321 core Amsacta moorei entomopoxvirus Amsacta moorei entomopoxvirus 28377 periphery Anolis carolinensis Anolis carolinensis 28875 core Rotavirus A (isolate Monkey/South Africa/SA11-H96/1958 G3-P5B[2]-I2-R2-C5-M5-A5-N5-T5-E2-H5) (RV-A) Rotavirus A (isolate Monkey/South Africa/SA11-H96/1958 G3-P5B[2]-I2-R2-C5-M5-A5-N5-T5-E2-H5) (RV-A) 29760 periphery Vitis vinifera Vitis vinifera 32603 core Human herpesvirus 6A (strain Uganda-1102) Human herpesvirus 6A (strain Uganda-1102) 32604 core Human herpesvirus 6B (strain Z29) Human herpesvirus 6B (strain Z29) 33773 core Olive latent virus 2 (isolate Italy) Olive latent virus 2 (isolate Italy) 35252 core Alcelaphine herpesvirus 1 (strain C500) Alcelaphine herpesvirus 1 (strain C500) 35287 core Rice tungro spherical virus (strain A) Rice tungro spherical virus (strain A) 35304 core Bunyamwera virus Bunyamwera virus 35305 core Bunyavirus La Crosse (isolate Human/United States/L78/1978) Bunyavirus La Crosse (isolate Human/United States/L78/1978) 36427 core Rotavirus C (isolate Human/United Kingdom/Bristol/1989) Rotavirus C (isolate Human/United Kingdom/Bristol/1989) 37124 core Chikungunya virus (strain S27-African prototype) Chikungunya virus (strain S27-African prototype) 37128 core Potato mop-top virus (isolate Potato/Sweden/Sw) Potato mop-top virus (isolate Potato/Sweden/Sw) 37296 core Human herpesvirus 8 type P (isolate GK18) Human herpesvirus 8 type P (isolate GK18) 37347 periphery Tupaia belangeri Tupaia belangeri 38525 core Avian metapneumovirus (isolate Canada goose/Minnesota/15a/2001) Avian metapneumovirus (isolate Canada goose/Minnesota/15a/2001) 38804 core Yaba monkey tumor virus (strain VR587) Yaba monkey tumor virus (strain VR587) 39947 core Oryza sativa Japonica Oryza sativa Japonica Group 40051 core Bluetongue virus 10 (isolate USA) Bluetongue virus 10 (isolate USA) 40631 core Enterobacteria phage N15 Enterobacteria phage N15 47416 core Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) 50294 core Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) 50817 core Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) 57482 core European bat lyssavirus 1 (strain Bat/Germany/RV9/1968) European bat lyssavirus 1 (strain Bat/Germany/RV9/1968) 63330 core Hendra virus (isolate Horse/Autralia/Hendra/1994) Hendra virus (isolate Horse/Autralia/Hendra/1994) 70796 core Avian encephalomyelitis virus (strain Calnek vaccine) Avian encephalomyelitis virus (strain Calnek vaccine) 90961 core Australian bat lyssavirus (isolate Bat/AUS/1996) Australian bat lyssavirus (isolate Bat/AUS/1996) 113370 core Spodoptera frugiperda ascovirus 1a (SfAV-1a) Spodoptera frugiperda ascovirus 1a (SfAV-1a) 116056 core Pelargonium zonate spot virus (isolate Tomato/Italy/1982) Pelargonium zonate spot virus (isolate Tomato/Italy/1982) 118140 core Porcine teschovirus 1 (isolate Pig/United Kingdom/F65/1967) Porcine teschovirus 1 (isolate Pig/United Kingdom/F65/1967) 129951 core Human adenovirus C serotype 2 Human adenovirus C serotype 2 132908 core Pteropus vampyrus Pteropus vampyrus 133704 core Porcine circovirus 1 (isolate China) Porcine circovirus 1 (isolate China) 138950 core Poliovirus type 1 (strain Mahoney) Poliovirus type 1 (strain Mahoney) 147711 core Human rhinovirus A serotype 89 (strain 41467-Gallo) Human rhinovirus A serotype 89 (strain 41467-Gallo) 155864 periphery Escherichia coli O157H7 Escherichia coli O157:H7 str. EDL933 162145 core Human metapneumovirus (strain CAN97-83) Human metapneumovirus (strain CAN97-83) 176652 core Invertebrate iridescent virus 6 (IIV-6) Invertebrate iridescent virus 6 (IIV-6) 180170 core Infectious spleen and kidney necrosis virus (isolate Mandarin fish/China/Nanhai/1998) Infectious spleen and kidney necrosis virus (isolate Mandarin fish/China/Nanhai/1998) 181082 core Emiliania huxleyi virus 86 (isolate United Kingdom/English Channel/1999) Emiliania huxleyi virus 86 (isolate United Kingdom/English Channel/1999) 186538 core Zaire ebolavirus (strain Mayinga-76) Zaire ebolavirus (strain Mayinga-76) 190061 core Fowl adenovirus A serotype 1 (strain CELO / Phelps) Fowl adenovirus A serotype 1 (strain CELO / Phelps) 194440 core Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) 194699 core Bordetella phage BPP-1 Bordetella phage BPP-1 195054 core Human parechovirus 2 (strain Williamson) Human parechovirus 2 (strain Williamson) 202566 core Cherry rasp leaf virus (isolate Potato/United States Cherry rasp leaf virus (isolate Potato/United States 208964 periphery Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 212035 core Acanthamoeba polyphaga mimivirus Acanthamoeba polyphaga mimivirus 214092 core Yersinia pestis CO92 Yersinia pestis CO92 216591 periphery Burkholderia cenocepacia Burkholderia cenocepacia J2315 220340 core Bean golden yellow mosaic virus (isolate Puerto Rico-Japan) Bean golden yellow mosaic virus (isolate Puerto Rico-Japan) 223926 periphery Vibrio parahaemolyticus Vibrio parahaemolyticus RIMD 2210633 224308 periphery Bacillus subtilis 168 Bacillus subtilis subsp. subtilis str. 168 243277 core Vibrio cholerae O1 Vibrio cholerae O1 biovar El Tor str. N16961 257310 core Bordetella bronchiseptica Bordetella bronchiseptica RB50 258594 periphery Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris CGA009 305674 core Deerpox virus (strain Mule deer/United States/W-848-83/1983) Deerpox virus (strain Mule deer/United States/W-848-83/1983) 307456 core Rachiplusia ou multiple nucleopolyhedrovirus (strain R1) Rachiplusia ou multiple nucleopolyhedrovirus (strain R1) 312185 core Equine rhinitis B virus 1 (strain Equine/Switzerland/P1436/71/1971) Equine rhinitis B virus 1 (strain Equine/Switzerland/P1436/71/1971) 312309 periphery Vibrio fischeri Vibrio fischeri ES114 316385 periphery Escherichia coli K12 DH10B Escherichia coli str. K-12 substr. DH10B 316407 periphery Escherichia coli K12 W3110 Escherichia coli str. K-12 substr. W3110 318558 core Tupaia virus (isolate Tupaia/Thailand/-/1986) Tupaia virus (isolate Tupaia/Thailand/-/1986) 318844 core Tibrogargan virus (strain CS132) Tibrogargan virus (strain CS132) 337041 core Human papillomavirus type 16 Human papillomavirus type 16 337042 core Human papillomavirus type 18 Human papillomavirus type 18 337051 core Human papillomavirus type 5 Human papillomavirus type 5 342409 core White spot syndrome virus (isolate Shrimp/China/Tongan/1996) White spot syndrome virus (isolate Shrimp/China/Tongan/1996) 345201 core Invertebrate iridescent virus 3 Invertebrate iridescent virus 3 348604 core Enterobacteria phage T4 Enterobacteria phage T4 351073 core Reovirus type 1 (strain Lang) Reovirus type 1 (strain Lang) 370833 core Tomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) Tomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) 374840 core Enterobacteria phage phiX174 (Isolate Sanger) Enterobacteria phage phiX174 (Isolate Sanger) 375286 core Janthinobacterium sp. Marseille Janthinobacterium sp. Marseille 469008 periphery Escherichia coli BL21DE3 Escherichia coli BL21(DE3) 481805 periphery Escherichia coli ATCC8739 Escherichia coli ATCC 8739 511145 core Escherichia coli K12 MG1655 Escherichia coli str. K-12 substr. MG1655 637910 core Citrobacter rodentium Citrobacter rodentium ICC168 693997 core Feline coronavirus (strain FIPV WSU-79/1146) Feline coronavirus (strain FIPV WSU-79/1146) 694005 core Murine coronavirus (strain A59) Murine coronavirus (strain A59) 694009 core Human SARS coronavirus Human SARS coronavirus 694014 core Avian infectious bronchitis virus (strain Beaudette) Avian infectious bronchitis virus (strain Beaudette) 748671 periphery Lactobacillus crispatus Lactobacillus crispatus ST1 1031711 core Ralstonia solanacearum Po82 Ralstonia solanacearum Po82 1094373 core Drosophila melanogaster sigma virus (isolate Drosophila/USA/AP30/2005) Drosophila melanogaster sigma virus (isolate Drosophila/USA/AP30/2005) 1285595 core Musca hytrovirus(isolate Musca domestica/United States/Boucias/-) Musca hytrovirus(isolate Musca domestica/United States/Boucias/-) 1285600 core Nile crocodilepox virus (isolate Crocodylus niloticus/Zimbabwe/Ume/2001) Nile crocodilepox virus (isolate Crocodylus niloticus/Zimbabwe/Ume/2001) 1297662 core Thrush coronavirus HKU12 (isolate Grey-backed thrush/Hong Kong/HKU12-600/2007) Thrush coronavirus HKU12 (isolate Grey-backed thrush/Hong Kong/HKU12-600/2007) 1330524 core Salivirus A (isolate Human/Nigeria/NG-J1/2007) Salivirus A (isolate Human/Nigeria/NG-J1/2007) 1335626 core Human coronavirus EMC (isolate United Kingdom/H123990006/2012) Human coronavirus EMC (isolate United Kingdom/H123990006/2012) 1511779 core Mischivirus A (isolate Miniopterus schreibersii/China/MsPV-1/2010) Mischivirus A (isolate Miniopterus schreibersii/China/MsPV-1/2010) 1511900 core Human parvovirus B19 (strain HV) Human parvovirus B19 (strain HV) 1511908 core Murine minute virus (strain MVM prototype) Murine minute virus (strain MVM prototype) 1513235 core Cafeteria roenbergensis virus (strain BV-PW1) Cafeteria roenbergensis virus (strain BV-PW1)