MCON_1550 protein (Methanosaeta concilii)

Network

Summary view: shows current interactions. Nodes can be moved; popups provide information on nodes & edges.

Databases

Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.

Experiments

Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.

Textmining

Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.

viruses.STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Textmining Associations:

Publications

... Prot1 ( gene symbol

) and Prot2 ( gene symbol

) ...

each publication record mentions at least two proteins of the current network. Associations are given a higher score when they occur in the same paragraph, or even in the same sentence.

Ambiguous Proteins

Prot1 (

/

)

when textmining associations are transferred from other organisms, ambiguities can happen: If the orthology/homology situation is unclear, a source protein in the foreign organism may be mapped to several proteins in your organism of interest.

Your Input:

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Cooccurence

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Textmining

[Homology]

Score

Proteins: MCON_1550

Predicted Functional Partners:

rpa

0.984

MCON_2842

0.851

MCON_1952

0.815

top6A

0.779

MCON_1545

0.774

top6B

0.752

MCON_1549

0.751

endA

0.671

MCON_1060

0.660

MCON_0721

0.659

Browse textmining interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	textmin. score
MCON_0721	MCON_2842	MCON_0721	MCON_2842	Hypothetical protein	OB-fold nucleic acid binding domain-containing protein	0.73
MCON_0721	rpa	MCON_0721	MCON_1551	Hypothetical protein	Single-stranded DNA-binding replication protein A	0.73
MCON_1549	rpa	MCON_1549	MCON_1551	AsnC family transcriptional regulator	Single-stranded DNA-binding replication protein A	0.83
MCON_1550	MCON_1952	MCON_1550	MCON_1952	Hypothetical protein	Ser/Thr protein phosphatase family protein	0.287
MCON_1550	MCON_2842	MCON_1550	MCON_2842	Hypothetical protein	OB-fold nucleic acid binding domain-containing protein	0.297
MCON_1550	endA	MCON_1550	MCON_2907	Hypothetical protein	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	0.165
MCON_1550	rpa	MCON_1550	MCON_1551	Hypothetical protein	Single-stranded DNA-binding replication protein A	0.407
MCON_1952	MCON_1550	MCON_1952	MCON_1550	Ser/Thr protein phosphatase family protein	Hypothetical protein	0.287
MCON_1952	MCON_2842	MCON_1952	MCON_2842	Ser/Thr protein phosphatase family protein	OB-fold nucleic acid binding domain-containing protein	0.151
MCON_1952	endA	MCON_1952	MCON_2907	Ser/Thr protein phosphatase family protein	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	0.44
MCON_1952	rpa	MCON_1952	MCON_1551	Ser/Thr protein phosphatase family protein	Single-stranded DNA-binding replication protein A	0.257
MCON_2842	MCON_0721	MCON_2842	MCON_0721	OB-fold nucleic acid binding domain-containing protein	Hypothetical protein	0.73
MCON_2842	MCON_1550	MCON_2842	MCON_1550	OB-fold nucleic acid binding domain-containing protein	Hypothetical protein	0.297
MCON_2842	MCON_1952	MCON_2842	MCON_1952	OB-fold nucleic acid binding domain-containing protein	Ser/Thr protein phosphatase family protein	0.151
MCON_2842	endA	MCON_2842	MCON_2907	OB-fold nucleic acid binding domain-containing protein	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	0.259
MCON_2842	rpa	MCON_2842	MCON_1551	OB-fold nucleic acid binding domain-containing protein	Single-stranded DNA-binding replication protein A	0.270
MCON_2842	top6A	MCON_2842	MCON_1547	OB-fold nucleic acid binding domain-containing protein	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.119
endA	MCON_1550	MCON_2907	MCON_1550	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	Hypothetical protein	0.165
endA	MCON_1952	MCON_2907	MCON_1952	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	Ser/Thr protein phosphatase family protein	0.44
endA	MCON_2842	MCON_2907	MCON_2842	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	OB-fold nucleic acid binding domain-containing protein	0.259

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