MCON_1550 protein (Methanosaeta concilii)

Textmining Associations:

Publications

... Prot1 ( gene symbol

) and Prot2 ( gene symbol

) ...

each publication record mentions at least two proteins of the current network. Associations are given a higher score when they occur in the same paragraph, or even in the same sentence.

Ambiguous Proteins

Prot1 (

/

)

when textmining associations are transferred from other organisms, ambiguities can happen: If the orthology/homology situation is unclear, a source protein in the foreign organism may be mapped to several proteins in your organism of interest.

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[Homology]

Score

Proteins: MCON_1550

Predicted Functional Partners:

rpa

0.984

MCON_2842

0.851

MCON_1952

0.815

top6A

0.779

MCON_1545

0.774

top6B

0.752

MCON_1549

0.751

endA

0.671

MCON_1060

0.660

MCON_0721

0.659

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Browse textmining interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	textmin. score
MCON_0721	MCON_2842	MCON_0721	MCON_2842	Hypothetical protein	OB-fold nucleic acid binding domain-containing protein	0.73
MCON_0721	rpa	MCON_0721	MCON_1551	Hypothetical protein	Single-stranded DNA-binding replication protein A	0.73
MCON_1549	rpa	MCON_1549	MCON_1551	AsnC family transcriptional regulator	Single-stranded DNA-binding replication protein A	0.83
MCON_1550	MCON_1952	MCON_1550	MCON_1952	Hypothetical protein	Ser/Thr protein phosphatase family protein	0.287
MCON_1550	MCON_2842	MCON_1550	MCON_2842	Hypothetical protein	OB-fold nucleic acid binding domain-containing protein	0.297
MCON_1550	endA	MCON_1550	MCON_2907	Hypothetical protein	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	0.165
MCON_1550	rpa	MCON_1550	MCON_1551	Hypothetical protein	Single-stranded DNA-binding replication protein A	0.407
MCON_1952	MCON_1550	MCON_1952	MCON_1550	Ser/Thr protein phosphatase family protein	Hypothetical protein	0.287
MCON_1952	MCON_2842	MCON_1952	MCON_2842	Ser/Thr protein phosphatase family protein	OB-fold nucleic acid binding domain-containing protein	0.151
MCON_1952	endA	MCON_1952	MCON_2907	Ser/Thr protein phosphatase family protein	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	0.44
MCON_1952	rpa	MCON_1952	MCON_1551	Ser/Thr protein phosphatase family protein	Single-stranded DNA-binding replication protein A	0.257
MCON_2842	MCON_0721	MCON_2842	MCON_0721	OB-fold nucleic acid binding domain-containing protein	Hypothetical protein	0.73
MCON_2842	MCON_1550	MCON_2842	MCON_1550	OB-fold nucleic acid binding domain-containing protein	Hypothetical protein	0.297
MCON_2842	MCON_1952	MCON_2842	MCON_1952	OB-fold nucleic acid binding domain-containing protein	Ser/Thr protein phosphatase family protein	0.151
MCON_2842	endA	MCON_2842	MCON_2907	OB-fold nucleic acid binding domain-containing protein	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	0.259
MCON_2842	rpa	MCON_2842	MCON_1551	OB-fold nucleic acid binding domain-containing protein	Single-stranded DNA-binding replication protein A	0.270
MCON_2842	top6A	MCON_2842	MCON_1547	OB-fold nucleic acid binding domain-containing protein	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.119
endA	MCON_1550	MCON_2907	MCON_1550	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	Hypothetical protein	0.165
endA	MCON_1952	MCON_2907	MCON_1952	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	Ser/Thr protein phosphatase family protein	0.44
endA	MCON_2842	MCON_2907	MCON_2842	tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp	OB-fold nucleic acid binding domain-containing protein	0.259

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