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Lab Experiments

Relevant datasets in Methanosaeta concilii:

(none).

Relevant information transferred from other organisms:

protein-protein interaction (dip)
Detected by pull down and x-ray crystallography assays
Methanosarcina mazei:   top6A    top6B  
protein-protein interaction (intact)
Detected by psi-mi:"MI:0018"(two hybrid) assay
Arabidopsis thaliana:   RHL2    TOP6B  
protein-protein interaction (intact)
Detected by psi-mi:"MI:0018"(two hybrid) assay
Arabidopsis thaliana:   RHL2    TOP6B  
protein-protein interaction (intact)
Detected by psi-mi:"MI:0018"(two hybrid) assay
Arabidopsis thaliana:   RHL2    TOP6B  
protein-protein interaction (intact)
Detected by psi-mi:"MI:0018"(two hybrid) assay
Arabidopsis thaliana:   RHL2    TOP6B  
protein-protein interaction (intact)
Detected by psi-mi:"MI:0018"(two hybrid) assay
Arabidopsis thaliana:   SPO11-2    TOP6B  
protein-protein interaction (intact)
Detected by psi-mi:"MI:0018"(two hybrid) assay
Arabidopsis thaliana:   RHL2    TOP6B  
Browse experimental interactions in tabular form:
MCON_2842MCON_3344MCON_2842MCON_3344
OB-fold nucleic acid binding domain-containing protein
DEAD/DEAH box helicase domain-containing protein
0.881
MCON_2842mcmMCON_2842MCON_3179
OB-fold nucleic acid binding domain-containing protein
Minichromosome maintenance protein MCM
0.842
MCON_2842mutSMCON_2842MCON_1572
OB-fold nucleic acid binding domain-containing protein
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity
0.784
MCON_2842pcnMCON_2842MCON_1510
OB-fold nucleic acid binding domain-containing protein
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication
0.796
MCON_2842polB2MCON_2842MCON_2011
OB-fold nucleic acid binding domain-containing protein
DNA polymerase 2
0.689
MCON_2842priLMCON_2842MCON_1508
OB-fold nucleic acid binding domain-containing protein
DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair
0.161
MCON_2842priSMCON_2842MCON_1623
OB-fold nucleic acid binding domain-containing protein
DNA primase small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...]
0.190
MCON_2842radAMCON_2842MCON_2843
OB-fold nucleic acid binding domain-containing protein
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules
0.802
MCON_2842radBMCON_2842MCON_0075
OB-fold nucleic acid binding domain-containing protein
DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange
0.802
MCON_3344MCON_2842MCON_3344MCON_2842
DEAD/DEAH box helicase domain-containing protein
OB-fold nucleic acid binding domain-containing protein
0.881
MCON_3344mutSMCON_3344MCON_1572
DEAD/DEAH box helicase domain-containing protein
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity
0.832
MCON_3344pcnMCON_3344MCON_1510
DEAD/DEAH box helicase domain-containing protein
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication
0.799
MCON_3344polB2MCON_3344MCON_2011
DEAD/DEAH box helicase domain-containing protein
DNA polymerase 2
0.840
MCON_3344radAMCON_3344MCON_2843
DEAD/DEAH box helicase domain-containing protein
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules
0.920
MCON_3344radBMCON_3344MCON_0075
DEAD/DEAH box helicase domain-containing protein
DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange
0.920
MCON_3344rpaMCON_3344MCON_1551
DEAD/DEAH box helicase domain-containing protein
Single-stranded DNA-binding replication protein A
0.881
MCON_3344top6AMCON_3344MCON_1547
DEAD/DEAH box helicase domain-containing protein
DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity
0.858
dnaGendAMCON_3176MCON_2907
Toprim domain-containing protein
tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp
0.992
dnaGmutSMCON_3176MCON_1572
Toprim domain-containing protein
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity
0.136
dnaGpolB2MCON_3176MCON_2011
Toprim domain-containing protein
DNA polymerase 2
0.136
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