Database Knowledge

Relevant datasets in Methanosaeta concilii:

(none).

Relevant information transferred from other organisms:

curated pathway
Pathway: Meiotic recombination

Mus musculus:

Rpa1

Spo11 [... and 17 other proteins]

curated pathway
Pathway: Meiotic Recombination

Mus musculus:

Rpa1

Spo11 [... and 39 other proteins]

curated pathway
Pathway: Meiotic recombination

Homo sapiens:

RPA1

SPO11 [... and 40 other proteins]

Viewers
Legend
Settings
Table
More
Less

Network

Summary view: shows current interactions. Nodes can be moved; popups provide information on nodes & edges.

Databases

Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.

Experiments

Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.

Textmining

Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.

viruses.STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Curated Knowledge from Databases:

Pathways Entries

Prot1

Prot2 ...

each database entry contains two or more proteins which have been annotated to be involved together in a pathway, protein complex of biological process.

Ambiguous Proteins

Prot1

when database knowledge is transferred from other organisms, ambiguities can happen: If the orthology/homology situation is unclear, a source protein in the foreign organism may be mapped to several proteins in your organism of interest.

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Proteins: MCON_1550

Predicted Functional Partners:

rpa

Single-stranded DNA-binding replication protein A (409 aa)

0.984

MCON_2842

OB-fold nucleic acid binding domain-containing protein (371 aa)

0.851

MCON_1952

Ser/Thr protein phosphatase family protein (264 aa)

0.815

top6A

DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity (375 aa)

0.779

MCON_1545

Hypothetical protein (60 aa)

0.774

Viewer Settings

showing datasets in your query organism:

show all

(i.e., all records containing at least two of your current proteins)

show top ten only

(ranked by number of relevant proteins per set)

showing datasets transferred from other organisms:

show all

(i.e., all records transferred to at least two of your current proteins)

show top ten only

(ranked by number of relevant proteins per set)

Update

Browse database interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	datab. score
MCON_2842	rpa	MCON_2842	MCON_1551	OB-fold nucleic acid binding domain-containing protein	Single-stranded DNA-binding replication protein A	0.800
MCON_2842	top6A	MCON_2842	MCON_1547	OB-fold nucleic acid binding domain-containing protein	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.634
rpa	MCON_2842	MCON_1551	MCON_2842	Single-stranded DNA-binding replication protein A	OB-fold nucleic acid binding domain-containing protein	0.800
rpa	top6A	MCON_1551	MCON_1547	Single-stranded DNA-binding replication protein A	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.634
top6A	MCON_2842	MCON_1547	MCON_2842	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	OB-fold nucleic acid binding domain-containing protein	0.634
top6A	rpa	MCON_1547	MCON_1551	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	Single-stranded DNA-binding replication protein A	0.634

Database Knowledge

Relevant datasets in Methanosaeta concilii:

Relevant information transferred from other organisms:

Network

Databases

Experiments

Textmining

© viruses.STRING Consortium 2018

Credits

Access

Info

About