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Database Knowledge

Relevant datasets in Methanosaeta concilii:

(none).

Relevant information transferred from other organisms:

curated complex (Gene Ontology)
DNA topoisomerase complex (ATP-hydrolyzing)
Arabidopsis thaliana:   RHL2    TOP6B   [... and 5 other proteins]
curated pathway
Pathway: Meiotic recombination
Mus musculus:  / Rpa1    Spo11   [... and 17 other proteins]
curated pathway
Pathway: Meiotic Recombination
Mus musculus:  / Rpa1    Spo11   [... and 39 other proteins]
curated pathway
Pathway: Meiotic recombination
Homo sapiens:  / RPA1    SPO11   [... and 40 other proteins]
Curated Knowledge from Databases:
Pathways Entries
gene symbol Prot1   gene symbol Prot2   ...
each database entry contains two or more proteins which have been annotated to be involved together in a pathway, protein complex of biological process.
Ambiguous Proteins
gene symbol/gene symbol/gene symbol Prot1   
when database knowledge is transferred from other organisms, ambiguities can happen: If the orthology/homology situation is unclear, a source protein in the foreign organism may be mapped to several proteins in your organism of interest.
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Proteins: MCON_1550
Predicted Functional Partners:
rpa
Single-stranded DNA-binding replication protein A (409 aa)
 score_image   score_image       score_image   0.984
MCON_2842
OB-fold nucleic acid binding domain-containing protein (371 aa)
 score_image   score_image       score_image   0.851
MCON_1952
Ser/Thr protein phosphatase family protein (264 aa)
 score_image   score_image       score_image   0.815
top6A
DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity (375 aa)
 score_image   score_image           0.779
MCON_1545
Hypothetical protein (60 aa)
 score_image   score_image           0.774
top6B
DNA topoisomerase VI subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity (611 aa)
 score_image   score_image           0.752
MCON_1549
AsnC family transcriptional regulator (76 aa)
 score_image   score_image           0.751
endA
tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5’ and 3’ splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’ cyclic phosphate and 5’-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (350 aa)
     score_image       score_image   0.671
MCON_1060
Hypothetical protein (121 aa)
 score_image   score_image           0.660
MCON_0721
Hypothetical protein (149 aa)
 score_image   score_image           0.659
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