MCON_1550 protein (Methanosaeta concilii)

Nodes and Egdes

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Network nodes represent host and virus proteins

Splice isoforms or post-translational modifications are collapsed, i.e. each host node represents all the proteins produced by a single, protein-coding gene locus. Virus nodes represent polyprotein cleavage products if the viral locus is polycistronic.

Edges represent protein-protein associations

Associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

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[Homology]

Score

Proteins: MCON_1550

Predicted Functional Partners:

rpa

0.984

MCON_2842

0.851

MCON_1952

0.815

top6A

0.779

MCON_1545

0.774

Export your current network:

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... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCON_1545	MCON_1550	MCON_1545	MCON_1550	Hypothetical protein	Hypothetical protein	0.774
MCON_1545	rpa	MCON_1545	MCON_1551	Hypothetical protein	Single-stranded DNA-binding replication protein A	0.775
MCON_1545	top6A	MCON_1545	MCON_1547	Hypothetical protein	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.731
MCON_1550	MCON_1545	MCON_1550	MCON_1545	Hypothetical protein	Hypothetical protein	0.774
MCON_1550	MCON_1952	MCON_1550	MCON_1952	Hypothetical protein	Ser/Thr protein phosphatase family protein	0.815
MCON_1550	MCON_2842	MCON_1550	MCON_2842	Hypothetical protein	OB-fold nucleic acid binding domain-containing protein	0.851
MCON_1550	rpa	MCON_1550	MCON_1551	Hypothetical protein	Single-stranded DNA-binding replication protein A	0.984
MCON_1550	top6A	MCON_1550	MCON_1547	Hypothetical protein	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.779
MCON_1952	MCON_1550	MCON_1952	MCON_1550	Ser/Thr protein phosphatase family protein	Hypothetical protein	0.815
MCON_1952	MCON_2842	MCON_1952	MCON_2842	Ser/Thr protein phosphatase family protein	OB-fold nucleic acid binding domain-containing protein	0.424
MCON_1952	rpa	MCON_1952	MCON_1551	Ser/Thr protein phosphatase family protein	Single-stranded DNA-binding replication protein A	0.566
MCON_2842	MCON_1550	MCON_2842	MCON_1550	OB-fold nucleic acid binding domain-containing protein	Hypothetical protein	0.851
MCON_2842	MCON_1952	MCON_2842	MCON_1952	OB-fold nucleic acid binding domain-containing protein	Ser/Thr protein phosphatase family protein	0.424
MCON_2842	rpa	MCON_2842	MCON_1551	OB-fold nucleic acid binding domain-containing protein	Single-stranded DNA-binding replication protein A	0.924
MCON_2842	top6A	MCON_2842	MCON_1547	OB-fold nucleic acid binding domain-containing protein	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.802
rpa	MCON_1545	MCON_1551	MCON_1545	Single-stranded DNA-binding replication protein A	Hypothetical protein	0.775
rpa	MCON_1550	MCON_1551	MCON_1550	Single-stranded DNA-binding replication protein A	Hypothetical protein	0.984
rpa	MCON_1952	MCON_1551	MCON_1952	Single-stranded DNA-binding replication protein A	Ser/Thr protein phosphatase family protein	0.566
rpa	MCON_2842	MCON_1551	MCON_2842	Single-stranded DNA-binding replication protein A	OB-fold nucleic acid binding domain-containing protein	0.924
rpa	top6A	MCON_1551	MCON_1547	Single-stranded DNA-binding replication protein A	DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity	0.930

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